Journal of Computer Applications ›› 2024, Vol. 44 ›› Issue (3): 752-759.DOI: 10.11772/j.issn.1001-9081.2023030300
Special Issue: 数据科学与技术
• Data science and technology • Previous Articles Next Articles
Shuhong XUE, Biao FENG, Hailong YU, Li WANG, Yunyun YANG()
Received:
2023-03-23
Revised:
2023-06-25
Accepted:
2023-06-26
Online:
2023-10-10
Published:
2024-03-10
Contact:
Yunyun YANG
About author:
XUE Shuhong, born in 1999, M. S. candidate. Her research interests include multilayer network motif.Supported by:
通讯作者:
杨云云
作者简介:
薛舒红(1999—),女,山西临汾人,硕士研究生,主要研究方向:多层网络模体基金资助:
CLC Number:
Shuhong XUE, Biao FENG, Hailong YU, Li WANG, Yunyun YANG. Motif detection algorithm in multiplex networks[J]. Journal of Computer Applications, 2024, 44(3): 752-759.
薛舒红, 冯彪, 于海龙, 王力, 杨云云. 多路复用网络中的模体检测算法[J]. 《计算机应用》唯一官方网站, 2024, 44(3): 752-759.
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URL: https://www.joca.cn/EN/10.11772/j.issn.1001-9081.2023030300
网络类别 | 网络名称 | |||||
---|---|---|---|---|---|---|
社交网络 | RDBWR | 2 | 14 | 29 | 12 | {28,13} |
KM | 2 | 15 | 44 | 0 | {19,25} | |
RHT | 2 | 16 | 58 | 0 | {29,29} | |
PFF | 2 | 16 | 27 | 8 | {20,15} | |
KTS | 2 | 39 | 278 | 103 | {158,223} | |
CSA | 2 | 61 | 197 | 18 | {21,194} | |
交通网络 | Africa | 2 | 16 | 19 | 0 | {9,10} |
Europe | 2 | 35 | 41 | 0 | {22,19} | |
Asia | 2 | 81 | 188 | 0 | {90,98} | |
NA | 2 | 161 | 386 | 0 | {174,212} | |
SA | 2 | 67 | 105 | 0 | {54,51} | |
Oceania | 2 | 74 | 129 | 0 | {84,45} | |
AT | 2 | 198 | 845 | 0 | {244,601} |
Tab. 1 Basic statistical characteristics of real networks
网络类别 | 网络名称 | |||||
---|---|---|---|---|---|---|
社交网络 | RDBWR | 2 | 14 | 29 | 12 | {28,13} |
KM | 2 | 15 | 44 | 0 | {19,25} | |
RHT | 2 | 16 | 58 | 0 | {29,29} | |
PFF | 2 | 16 | 27 | 8 | {20,15} | |
KTS | 2 | 39 | 278 | 103 | {158,223} | |
CSA | 2 | 61 | 197 | 18 | {21,194} | |
交通网络 | Africa | 2 | 16 | 19 | 0 | {9,10} |
Europe | 2 | 35 | 41 | 0 | {22,19} | |
Asia | 2 | 81 | 188 | 0 | {90,98} | |
NA | 2 | 161 | 386 | 0 | {174,212} | |
SA | 2 | 67 | 105 | 0 | {54,51} | |
Oceania | 2 | 74 | 129 | 0 | {84,45} | |
AT | 2 | 198 | 845 | 0 | {244,601} |
网络名称 | 不同子图的出现次数 | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
M1 | M2 | M3 | M4 | M5 | M6 | M7 | M8 | M9 | M10 | M11 | M12 | M13 | M14 | M15 | M16 | |
RDBWR | 0 | 3 | 5 | 13 | 7 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 2 | 17 | 4 | 6 |
KM | 58 | 61 | 0 | 26 | 0 | 0 | 4 | 10 | 0 | 16 | 0 | 0 | 3 | 0 | 0 | 0 |
RHT | 40 | 111 | 0 | 32 | 0 | 0 | 7 | 40 | 0 | 2 | 0 | 0 | 19 | 0 | 0 | 0 |
PFF | 4 | 10 | 10 | 13 | 15 | 6 | 0 | 0 | 3 | 1 | 1 | 2 | 0 | 3 | 0 | 0 |
KTS | 437 | 375 | 621 | 79 | 345 | 258 | 79 | 54 | 144 | 27 | 112 | 142 | 4 | 42 | 69 | 86 |
CSA | 1 106 | 12 | 129 | 0 | 3 | 8 | 174 | 7 | 34 | 0 | 1 | 4 | 0 | 0 | 2 | 2 |
Tab. 2 Number of occurrences of 3-node multiplex subgraphs in social networks
网络名称 | 不同子图的出现次数 | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
M1 | M2 | M3 | M4 | M5 | M6 | M7 | M8 | M9 | M10 | M11 | M12 | M13 | M14 | M15 | M16 | |
RDBWR | 0 | 3 | 5 | 13 | 7 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 2 | 17 | 4 | 6 |
KM | 58 | 61 | 0 | 26 | 0 | 0 | 4 | 10 | 0 | 16 | 0 | 0 | 3 | 0 | 0 | 0 |
RHT | 40 | 111 | 0 | 32 | 0 | 0 | 7 | 40 | 0 | 2 | 0 | 0 | 19 | 0 | 0 | 0 |
PFF | 4 | 10 | 10 | 13 | 15 | 6 | 0 | 0 | 3 | 1 | 1 | 2 | 0 | 3 | 0 | 0 |
KTS | 437 | 375 | 621 | 79 | 345 | 258 | 79 | 54 | 144 | 27 | 112 | 142 | 4 | 42 | 69 | 86 |
CSA | 1 106 | 12 | 129 | 0 | 3 | 8 | 174 | 7 | 34 | 0 | 1 | 4 | 0 | 0 | 2 | 2 |
网络名称 | 不同子图的出现次数 | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
M1 | M2 | M3 | M4 | M5 | M6 | M7 | M8 | M9 | M10 | M11 | M12 | M13 | M14 | M15 | M16 | |
Africa | 11 | 0 | 0 | 21 | 0 | 0 | 5 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 |
Europe | 58 | 0 | 0 | 47 | 0 | 0 | 3 | 0 | 0 | 0 | 0 | 0 | 2 | 0 | 0 | 0 |
Asia | 601 | 10 | 0 | 1 318 | 0 | 0 | 126 | 0 | 0 | 0 | 0 | 0 | 57 | 0 | 0 | 0 |
NA | 3 050 | 566 | 0 | 2 715 | 0 | 0 | 247 | 3 | 0 | 0 | 0 | 0 | 37 | 0 | 0 | 0 |
SA | 242 | 16 | 0 | 765 | 0 | 0 | 39 | 0 | 0 | 1 | 0 | 0 | 12 | 0 | 0 | 0 |
Oceania | 183 | 148 | 0 | 919 | 0 | 0 | 7 | 0 | 0 | 0 | 0 | 0 | 69 | 0 | 0 | 0 |
AT | 10 662 | 689 | 0 | 6 646 | 0 | 0 | 974 | 2 | 0 | 64 | 0 | 0 | 248 | 0 | 0 | 0 |
Tab. 3 Number of occurrences of 3-node multiplex subgraphs in transportation networks
网络名称 | 不同子图的出现次数 | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
M1 | M2 | M3 | M4 | M5 | M6 | M7 | M8 | M9 | M10 | M11 | M12 | M13 | M14 | M15 | M16 | |
Africa | 11 | 0 | 0 | 21 | 0 | 0 | 5 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 |
Europe | 58 | 0 | 0 | 47 | 0 | 0 | 3 | 0 | 0 | 0 | 0 | 0 | 2 | 0 | 0 | 0 |
Asia | 601 | 10 | 0 | 1 318 | 0 | 0 | 126 | 0 | 0 | 0 | 0 | 0 | 57 | 0 | 0 | 0 |
NA | 3 050 | 566 | 0 | 2 715 | 0 | 0 | 247 | 3 | 0 | 0 | 0 | 0 | 37 | 0 | 0 | 0 |
SA | 242 | 16 | 0 | 765 | 0 | 0 | 39 | 0 | 0 | 1 | 0 | 0 | 12 | 0 | 0 | 0 |
Oceania | 183 | 148 | 0 | 919 | 0 | 0 | 7 | 0 | 0 | 0 | 0 | 0 | 69 | 0 | 0 | 0 |
AT | 10 662 | 689 | 0 | 6 646 | 0 | 0 | 974 | 2 | 0 | 64 | 0 | 0 | 248 | 0 | 0 | 0 |
网络类别 | 网络名称 | 模体 |
---|---|---|
社交网络 | RDBWR | M4、M5、M14、M15、M16 |
KM | M1、M2、M4、M8、M10 | |
RHT | M1、M2、M4、M7、M8、M13 | |
PFF | M3、M4、M5、M6 | |
KTS | M2、M3、M4、M5、M6、M12、M14、M15、M16 | |
CSA | M2、M3、M6、M7、M9、M12 | |
交通网络 | Africa | M1、M4、M7 |
Europe | M4 | |
Asia | M2、M4、M7、M13 | |
NA | M1、M2、M4、M13 | |
SA | M2、M4、M7、M13 | |
Oceania | M2、M4、M7、M13 | |
AT | M1、M2、M4、M10、M13 |
Tab. 4 Three-node multiplex motifs in networks
网络类别 | 网络名称 | 模体 |
---|---|---|
社交网络 | RDBWR | M4、M5、M14、M15、M16 |
KM | M1、M2、M4、M8、M10 | |
RHT | M1、M2、M4、M7、M8、M13 | |
PFF | M3、M4、M5、M6 | |
KTS | M2、M3、M4、M5、M6、M12、M14、M15、M16 | |
CSA | M2、M3、M6、M7、M9、M12 | |
交通网络 | Africa | M1、M4、M7 |
Europe | M4 | |
Asia | M2、M4、M7、M13 | |
NA | M1、M2、M4、M13 | |
SA | M2、M4、M7、M13 | |
Oceania | M2、M4、M7、M13 | |
AT | M1、M2、M4、M10、M13 |
1 | ROETHLISBERGER F J, DICKSON W J. Management and the Worker [M]. Cambridge: Harvard University Press, 1939: 306-308. |
2 | CARDILLO A, GÖMEZ-GARDEÑES J, ZANIN M, et al. Emergence of network features from multiplexity[J]. Scientific Reports, 2013, 3(1): 1344. 10.1038/srep01344 |
3 | BENTLEY B, BRANICKY R, BARNES C L, et al. The multilayer connectome of caenorhabditis elegans [J]. PLoS Computational Biology, 2016, 12: e1005283. 10.1371/journal.pcbi.1005283 |
4 | BATTISTON F, NICOSIA V, CHAVEZ M, et al. Multilayer motif analysis of brain networks [J]. Chaos, 2017, 27(4): 047404. 10.1063/1.4979282 |
5 | COZZO E, KIVELÄ M, DE DOMENICO M, et al. Structure of triadic relations in multiplex networks [J]. New Journal of Physics, 2015, 7: 073029. 10.1088/1367-2630/17/7/073029 |
6 | KIVELÄ M, PORTER M A. Isomorphisms in multilayer networks[J]. IEEE Transactions on Network Science and Engineering, 2018, 5(3): 198-211. 10.1109/tnse.2017.2753963 |
7 | 李从东,章志伟,曹策俊,等.基于多重网络的复杂产品工程变更传播影响评估[J].计算机应用,2020,40(4): 1215-1222. 10.11772/j.issn.1001-9081.2019101779 |
LI C D, ZHANG Z W, CAO C J, et al. Impact assessment of engineering change propagation for complex products based on multiplex network [J]. Journal of Computer Applications, 2020,40(4): 1215-1222. 10.11772/j.issn.1001-9081.2019101779 | |
8 | 吴宗柠,狄增如,樊瑛.多层网络的结构与功能研究进展[J].电子科技大学学报,2021,50(1):106-120. 10.12178/1001-0548.2020068 |
WU Z N, DI Z R, FAN Y. The structure and function of multilayer networks: progress and prospects [J]. Journal of University of Electronic Science and Technology of China, 2021, 50(1): 106-120. 10.12178/1001-0548.2020068 | |
9 | SOLÁ L, ROMANCE M, CRIADO R, et al. Eigenvector centrality of nodes in multiplex networks [J]. Chaos, 2013, 23(3): 033131. 10.1063/1.4818544 |
10 | HALU A, MONDRAGÓN R J, PANZARASA P, et al. Multiplex PageRank [J]. PLoS ONE, 2013, 8(10): e78293. 10.1371/journal.pone.0078293 |
11 | BIANCONI G. Statistical mechanics of multiplex networks: entropy and overlap [J]. Physical Review E, 2013, 87: 062806. 10.1103/physreve.87.062806 |
12 | MILO R, SHEN-ORR S, ITZKOVITZ S, et al. Network motifs: simple building blocks of complex networks[J]. Science, 2002, 298(5594): 824-827. 10.1126/science.298.5594.824 |
13 | ITZKOVITZ S, ALON U. Subgraphs and network motifs in geometric networks [J]. Physical Review E, 2005, 71: 026117. 10.1103/physreve.71.026117 |
14 | MILO R, ITZKOVITZ S, KASHTAN N, et al. Superfamilies of evolved and designed networks[J]. Science, 2004, 303(5663): 1538-1542. 10.1126/science.1089167 |
15 | BENSON A R, GLEICH D F, LESKOVEC J. Higher-order organization of complex networks[J]. Science, 2016, 353(6295): 163-166. 10.1126/science.aad9029 |
16 | MÄRTENS M, MEIER J, HILLEBRAND A, et al. Brain network clustering with information flow motifs[J]. Applied Network Science, 2017, 2(1): 25. 10.1007/s41109-017-0046-z |
17 | YU S, FENG Y, ZHANG D, et al. Motif discovery in networks: a survey [J]. Computer Science Review, 2020, 37: 100267. 10.1016/j.cosrev.2020.100267 |
18 | 胡博仁,裴忠民,罗章凯,等.基于零模型的含时网络模体识别方法[J].计算机应用, 2023, 43(8): 2505-2510. 10.11772/j.issn.1001-9081.2022071033 |
HU B R, PEI Z M, LUO Z K, et al. Temporal network motif discovery method based on null model [J]. Journal of Computer Applications, 2023, 43(8): 2505-2510. 10.11772/j.issn.1001-9081.2022071033 | |
19 | TAKES F W, KOSTERS W A, WITTE B, et al. Multiplex network motifs as building blocks of corporate networks[J]. Applied Network Science, 2018, 3: 39. 10.1007/s41109-018-0094-z |
20 | REN Y, SARKAR A, VELTRI P, et al. Pattern discovery in multilayer networks[J]. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2022, 19(2): 741-752. 10.1109/tcbb.2021.3105001 |
21 | NAIR L S, CHERIYAN J, SWAMINATHAN J. Microscopic structural analysis of complex networks: an empirical study using motifs [J]. IEEE Access, 2022, 10: 33220-33229. 10.1109/access.2022.3160206 |
22 | KIVELÄ M, ARENAS A, BARTHELEMY M, et al. Multilayer networks[J]. Journal of Complex Networks, 2014, 2(3): 203-271. 10.1093/comnet/cnu016 |
23 | TRAN N T L, MOHAN S, XU Z, et al. Current innovations and future challenges of network motif detection[J]. Briefings in Bioinformatics, 2015, 16(3): 497-525. 10.1093/bib/bbu021 |
24 | RIBEIRO P, SILVA F, KAISER M. Strategies for network motifs discovery [C]// Proceedings of the 5th IEEE International Conference on e-Science. Piscataway: IEEE, 2009: 80-87. 10.1109/e-science.2009.20 |
25 | WERNICKE S. Efficient detection of network motifs[J]. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2006, 3(4): 347-359. 10.1109/tcbb.2006.51 |
26 | 韩华,刘婉璐,吴翎燕.基于模体的复杂网络测度量研究[J]. 物理学报, 2013,62(16): 168904. 10.7498/aps.62.168904 |
HAN H, LIU W L, WU L Y. The measurement of complex network based on motif [J]. Acta Physica Sinica, 2013, 62(16): 168904. 10.7498/aps.62.168904 | |
27 | 李欢,卢罡,郭俊霞.复杂网络零模型的量化评估[J].计算机应用,2015,35(6):1560-1563,1572. 10.11772/j.issn.1001-9081.2015.06.1560 |
LI H, LU G, GUO J X. Quantitative evaluation for null models of complex networks[J]. Journal of Computer Applications, 2015, 35(6): 1560-1563, 1572. 10.11772/j.issn.1001-9081.2015.06.1560 | |
28 | DOREIAN P. On the connectivity of social networks[J]. The Journal of Mathematical Sociology, 1974, 3(2): 245-258. 10.1080/0022250x.1974.9989837 |
29 | HAGE P, HARARY F. Structural Models in Anthropology[M]. Cambridge: Cambridge University Press, 1984: 56-60. 10.1017/cbo9780511659843 |
30 | BREIGER R L, PATTISON P E. Cumulated social roles: the duality of persons and their algebras [J]. Social Networks, 1986, 8(3): 215-256. 10.1016/0378-8733(86)90006-7 |
31 | KAPFERER B. Strategy and Transaction in an African Factory: African Workers and Indian Management in a Zambian Town[M]. Manchester: Manchester University Press, 1972: 329-330. 10.2307/1159273 |
32 | MAGNANI M, MICENKOVA B, ROSSI L. Combinatorial analysis of multiple networks[EB/OL]. (2013-03-20) [2022-11-19]. . |
33 | NICOSIA V, LATORA V. Measuring and modeling correlations in multiplex networks [J]. Physical Review E, 2015, 92: 032805. 10.1103/physreve.92.032805 |
34 | FOGGIA P, SANSONE C, VENTO M. A performance comparison of five algorithms for graph isomorphism [C]// Proceedings of the 3rd IAPR TC-15 Workshop on Graph-based Representations in Pattern Recognition. Cham: Springer, 2001: 188-199. http://dx.doi.org/ |
35 | ZHONG L, ZHANG Q, YANG D, et al. Analysing motifs in multilayer networks [EB/OL]. [2022-12-10]. . |
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