Journal of Computer Applications ›› 2022, Vol. 42 ›› Issue (11): 3404-3412.DOI: 10.11772/j.issn.1001-9081.2021111956
Special Issue: 第九届CCF大数据学术会议(CCF Bigdata 2021)
• CCF Bigdata 2021 • Previous Articles Next Articles
Received:
2021-11-17
Revised:
2021-11-23
Accepted:
2021-12-06
Online:
2021-12-31
Published:
2022-11-10
Contact:
Tao JIA
About author:
LI Xinborn in 1997, M. S. candidate. Her research interests include data mining, bioinformatics, machine learning.Supported by:
通讯作者:
贾韬
作者简介:
李昕(1997—),女,四川绵阳人,硕士研究生,CCF会员,主要研究方向:数据挖掘、生物信息学、机器学习基金资助:
CLC Number:
Xin LI, Tao JIA. Deep fusion model for predicting differential gene expression by histone modification data[J]. Journal of Computer Applications, 2022, 42(11): 3404-3412.
李昕, 贾韬. 基于组蛋白修饰数据预测基因差异性表达的深度融合模型[J]. 《计算机应用》唯一官方网站, 2022, 42(11): 3404-3412.
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URL: https://www.joca.cn/EN/10.11772/j.issn.1001-9081.2021111956
组蛋白修饰 | 相关基因组区域 |
---|---|
H3K4me1 | 增强子(Enhancer) |
H3K4me3 | 启动子(Promoter) |
H3K9me3 | 异染色质(Heterochromatin) |
H3K27me3 | Polycomb抑制(Polycomb repression) |
H3K36me3 | 转录(Transcribed) |
Tab. 1 Histone modification and related genome regions
组蛋白修饰 | 相关基因组区域 |
---|---|
H3K4me1 | 增强子(Enhancer) |
H3K4me3 | 启动子(Promoter) |
H3K9me3 | 异染色质(Heterochromatin) |
H3K27me3 | Polycomb抑制(Polycomb repression) |
H3K36me3 | 转录(Transcribed) |
Tab. 2 Nine selected cell types and IDs in REMC database
Tab. 3 Chosen cell type pairs for experiments
序号 | ||||
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Tab. 4 Statistics of DE genes and correctly detected DE genes by dcsDiff and DeepDiff on each cell type pair
序号 | ||||
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Tab. 5 Size of bin and corresponding number of bins
Tab. 6 Statistics of running time
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